Tomáš Faragó

Current position
Previous positions
  • PhD student
Field of research
  • 3D image reconstruction, image analysis, experiment automation, X-ray imaging simulation
Annual Reports and Annual Highlights (co-editor)
  • Contributions to ANKA annual reports since 2011

Publications


  1. Tofu : a fast, versatile and user-friendly image processing toolkit for computed tomography
    Faragó, T.; Gasilov, S.; Emslie, I.; Zuber, M.; Helfen, L.; Vogelgesang, M.; Baumbach, T.
    2022. Journal of Synchrotron Radiation, 29 (3). doi:10.1107/S160057752200282X
  2. Evolution of flexible biting in hyperdiverse parasitoid wasps
    Kamp, T. van de; Mikó, I.; Staniczek, A. H.; Eggs, B.; Bajerlein, D.; Faragó, T.; Hagelstein, L.; Hamann, E.; Spiecker, R.; Baumbach, T.; Janšta, P.; Krogmann, L.
    2022. Proceedings of the Royal Society B: Biological Sciences, 289 (1967), Art.-Nr.: 2021.2086. doi:10.1098/rspb.2021.2086
  3. Juvenile ecology drives adult morphology in two insect orders
    Rühr, P. T.; Kamp, T. van de; Faragó, T.; Hammel, J. U.; Wilde, F.; Borisova, E.; Edel, C.; Frenzel, M.; Baumbach, T.; Blanke, A.
    2021. Proceedings of the Royal Society B: Biological Sciences, 288 (1953), Art.-Nr.: 20210616. doi:10.1098/rspb.2021.0616
  4. Drought-Induced Xylem Embolism Limits the Recovery of Leaf Gas Exchange in Scots Pine
    Rehschuh, R.; Cecilia, A.; Zuber, M.; Faragó, T.; Baumbach, T.; Hartmann, H.; Jansen, S.; Mayr, S.; Ruehr, N.
    2020. Plant physiology, 184 (2), 852–864. doi:10.1104/pp.20.00407
  5. Introducing Biomedisa as an open-source online platform for biomedical image segmentation
    Lösel, P. D.; Van de Kamp, T.; Jayme, A.; Ershov, A.; Faragó, T.; Pichler, O.; Tan Jerome, N.; Aadepu, N.; Bremer, S.; Chilingaryan, S. A.; Heethoff, M.; Kopmann, A.; Odar, J.; Schmelzle, S.; Zuber, M.; Wittbrodt, J.; Baumbach, T.; Heuveline, V.
    2020. Nature Communications, 11 (1), Article no: 5577. doi:10.1038/s41467-020-19303-w
  6. Morphology of powerful suction organs from blepharicerid larvae living in raging torrents
    Kang, V.; Johnston, R.; Kamp, T. van de; Faragó, T.; Federle, W.
    2019. BMC zoology, 4 (1), Article No.10. doi:10.1186/s40850-019-0049-6
  7. Visualization of electrolyte flow in vanadium redox flow batteries using synchrotron X-ray radiography and tomography – Impact of electrolyte species and electrode compression
    Bevilacqua, N.; Eifert, L.; Banerjee, R.; Köble, K.; Faragó, T.; Zuber, M.; Bazylak, A.; Zeis, R.
    2019. Journal of power sources, 439, 227071. doi:10.1016/j.jpowsour.2019.227071
  8. Megahertz x-ray microscopy at x-ray free-electron laser and synchrotron sources
    Vagovič, P.; Sato, T.; Mikeš, L.; Mills, G.; Graceffa, R.; Mattsson, F.; Villanueva-Perez, P.; Ershov, A.; Faragó, T.; Uličný, J.; Kirkwood, H.; Letrun, R.; Mokso, R.; Zdora, M.-C.; Olbinado, M. P.; Rack, A.; Baumbach, T.; Schulz, J.; Meents, A.; Chapman, H. N.; Mancuso, A. P.
    2019. Optica, 6 (9), 1106. doi:10.1364/OPTICA.6.001106
  9. Simulation framework SYRIS tested for microtomography applications at the imaging beamline P05/PETRA III
    Otte, F.; Faragó, T.; Moosmann, J.; Hipp, A. C.; Hammel, J. U.; Beckmann, F.
    2019. AIP conference proceedings, 2054, 060084. doi:10.1063/1.5084715
  10. Parasitoid biology preserved in mineralized fossils
    Kamp, T. van de; Schwermann, A. H.; Santos Rolo, T. dos; Lösel, P. D.; Engler, T.; Etter, W.; Faragó, T.; Göttlicher, J.; Heuveline, V.; Kopmann, A.; Mähler, B.; Mörs, T.; Odar, J.; Rust, J.; Tan Jerome, N.; Vogelgesang, M.; Baumbach, T.; Krogmann, L.
    2018. Nature Communications, 9 (1), Article: 3325. doi:10.1038/s41467-018-05654-y
  11. Recovery of Pinus sylvestris from severe drought: Impacts on leaf gas exchange and xylem embolisms
    Rehschuh, R.; Zuber, M.; Cecilia, A.; Faragó, T.; Baumbach, T.; Hartmann, H.; Jansen, S.; Mayr, S.; Ruehr, N.
    2018. vEGU21: European Geosciences Union General Assembly (EGU 2018), Vienna, Austria, April 8–13, 2018
  12. Syris : A flexible and efficient framework for X-ray imaging experiments simulation
    Farago, T.; Mikulik, P.; Ershov, A.; Vogelgesang, M.; Hänschke, D.; Baumbach, T.
    2017. Journal of synchrotron radiation, 24 (6), 1283–1295. doi:10.1107/S1600577517012255
  13. Generalized pupil function of a compound X-ray refractive lens
    Gasilov, S.; Dos Santos Rolo, T.; Mittone, A.; Polyakov, S.; Terentyev, S.; Farago, T.; Blank, V.; Bravin, A.; Baumbach, T.
    2017. Optics express, 25 (21), 25090–25097. doi:10.1364/OE.25.025090
  14. Image-based Control and Automation of High-speed X-ray Imaging Experiments. PhD dissertation
    Faragó, T.
    2017. Karlsruher Institut für Technologie (KIT). doi:10.5445/IR/1000073571
  15. Optimizing structural and mechanical properties of cryogel scaffolds for use in prostate cancer cell culturing
    Cecilia, A.; Baecker, A.; Rack, A.; Hamann, E.; Kamp, T. van de; Gruhl, F. J.; Hofmann, R.; Moosmann, J.; Hahn, S.; Kashef, J.; Bauer, S.; Faragó, T.; Helfen, L.; Baumbach, T.
    2017. Materials science and engineering / C, 71, 465–472. doi:10.1016/j.msec.2016.10.038
  16. UFO — a scalable platform for high-speed synchrotron X-ray imaging
    Kopmann, A.; Chilingaryan, S.; Vogelgesang, M.; Dritschler, T.; Shkarin, A.; Shkarin, R.; Santos Rolo, T. dos; Farago, T.; Kamp, T. van de; Balzer, M.; Caselle, M.; Weber, M.
    2016. 2016 IEEE Nuclear Science Symposium, Medical Imaging Conference and Room-Temperature Semiconductor Detector Workshop (NSS/MIC/RTSD), Strasbourg, France, 29 October–6 November 2016, 1–5, Institute of Electrical and Electronics Engineers (IEEE). doi:10.1109/NSSMIC.2016.8069895
  17. UFO - a scalable platform for high-speed synchrotron X-ray imaging
    Kopmann, A.; Chilingaryan, S.; Vogelgesang, M.; Dritschler, T.; Shkarin, A.; Shkarin, R.; Santos Rolo, T. dos; Farago, T.; Kamp, T. van de; Balzer, M.; Caselle, M.; Weber, M.; Baumbach, T.
    2016. IEEE Nuclear Science Symposium (NSS) and Medical Imaging Conference (MIC), Strasbourg, F, October 29 - November 5, 2016
  18. Real-time image-content-based beamline control for smart 4D X-ray imaging
    Vogelgesang, M.; Farago, T.; Morgeneyer, T. F.; Helfen, L.; Dos Santos Rolo, T.; Myagotin, A.; Baumbach, T.
    2016. Journal of synchrotron radiation, 23, 1254–1263. doi:10.1107/S1600577516010195
  19. Three-dimensional-printed gas dynamic virtual nozzles for x-ray laser sample delivery
    Nelson, G.; Kirian, R. A.; Weierstall, U.; Zatsepin, N. A.; Faragó, T.; Baumbach, T.; Wilde, F.; Niesler, F. B. P.; Zimmer, B.; Ishigami, I.; Hikita, M.; Bajt, S.; Yeh, S.-R.; Rousseau, D. L.; Chapman, H. N.; Spence, J. C. H.; Heymann, M.
    2016. Optics express, 24 (11), 11515–11530. doi:10.1364/OE.24.011515
  20. On the origin and nature of the grating interferometric dark-field contrast obtained with low-brilliance x-ray sources
    Koenig, T.; Zuber, M.; Trimborn, B.; Farago, T.; Meyer, P. J.; Kunka, D.; Albrecht, F. W.; Kreuer, S.; Volk, T.; Fiederle, M.; Baumbach, T.
    2016. Physics in medicine and biology, 61 (9), 3427–3442. doi:10.1088/0031-9155/61/9/3427
  21. Efficient GPU-enabled computing infrastructure for high-speed data acquisition
    Chilingaryan, S.; Caselle, M.; Dritschler, T.; Farago, T.; Kopmann, A.; Stevanovic, U.; Vogelgesang, M.
    2016. 2nd General Meeting ’Matter and Technologies’, Karlsruhe, March 8-10, 2016
  22. Fast and time-resolved tomography at ANKA: Applications, infrastructure and data management
    Kamp, T. van de; Santos Rolo, T. dos; Farago, T.; Kopmann, A.; Vogelgesang, M.; Chilingaryan, S.; Ershov, A.; Baumbach, T.
    2015. 12th International Conference on Synchrotron Radiation Instrumentation (SRI 2015), New York, N.Y., July 6-10, 2015
  23. A control system and streaming DAQ platform with image-based trigger for X-ray imaging
    Stevanovic, U.; Caselle, M.; Cecilia, A.; Chilingaryan, S.; Farago, T.; Gasilov, S.; Herth, A.; Kopmann, A.; Vogelgesang, M.; Balzer, M.; Baumbach, T.; Weber, M.
    2015. IEEE transactions on nuclear science, 62, 911–918. doi:10.1109/TNS.2015.2425911
  24. Infiniband interconnects for high-throughput data acquisition in a TANGO environment
    Dritschler, T.; Chilingaryan, S.; Farago, T.; Kopmann, A.; Vogelgesang, M.
    2015. PCaPAC2014: proceedings of the 10th International Workshop on Personal Computers and Particle Accelerator Controls : organized by ANKA, the Sychrotron Radiation Source at Karlsruhe Institute of Technology and held at the Convention Center Karlsruhe, Germany, 14 - 17 October 2014 / ed. board: Wolfgang Mexner ..., FPO001, 161–163, CERN
  25. Data workflows, integration with UFO and ANKA environment
    Vondrous, A.; Jejkal, T.; Dapp, R.; Stotzka, R.; Mexner, W.; Ressmann, D.; Mauch, V.; Kopmann, A.; Vogelgesang, M.; Farago, T.; Kamp, T. van de
    2015. 3rd ASTOR Working Day, Karlsruhe, March 19, 2015
  26. Control system and smart camera with image based trigger for fast synchrotron applications
    Stevanovic, U.; Caselle, M.; Balzer, M.; Cecilia, A.; Chilingaryan, S.; Farago, T.; Gasilov, S.; Herth, A.; Kopmann, A.; Vogelgesang, M.; Weber, M.
    2014. 2014 19th IEEE-NPSS Real Time Conference (RT 2014), Nara, Japan, May 26 - 30, 2014, Art.Nr.:7097495, Institute of Electrical and Electronics Engineers (IEEE). doi:10.1109/RTC.2014.7097495
  27. Infiniband interconnects for high-throughput data acquisition in a TANGO environment
    Dritschler, T.; Chilingaryan, S.; Farago, T.; Kopmann, A.; Vogelgesang, M.
    2014. 10th International Workshop on Personal Computers and Particle Accelerator Controls (PCaPAC 2014), Karlsruhe, October 14-17, 2014
  28. Computing infrastructure for online monitoring and control of high-throughput DAQ electronics
    Chilingaryan, S.; Caselle, M.; Dritschler, T.; Farago, T.; Kopmann, A.; Stevanovic, U.; Vogelgesang, M.
    2014. 10th International Workshop on Personal Computers and Particle Accelerator Controls (PCaPAC 2014), Karlsruhe, October 14-17, 2014
  29. The UFO DAQ-framework for high-performance data acquisition in synchrotron applications
    Kopmann, A.; Balzer, M.; Caselle, M.; Chilingaryan, S.; Dritschler, T.; Farago, T.; Herth, A.; Rota, L.; Stevanovic, U.; Vogelgesang, M.; Weber, M.
    2014. Science 3D Workshop, Hamburg June 2-4, 2014
  30. Computing infrastructure for online monitoring and control of high-throughput DAQ electronics
    Chilingaryan, S.; Caselle, M.; Dritschler, T.; Farago, T.; Kopmann, A.; Stevanovic, U.; Vogelgesang, M.
    2014. 10th International Workshop on Personal Computers and Particle Accelerator Controls (PCaPAC 2014), Karlsruhe, 14.- 17. Oktober 2014
  31. In-situ Radiography of an Emulsification Process
    Farago, T.; Dos Santos Rolo, T.; Hensel, A.; Kraut, M.
    2014. ANKA User Reports 2012/2013, 87, Karlsruher Institut für Technologie (KIT)
  32. UFO - Status and perspectives of ultrafast X-ray imaging at ANKA
    Chilingayan, S.; Balzer, M.; Caselle, M.; Santos Rolo, T. dos; Dritschler, T.; farago, T.; Kopmann, A.; Stevanovic, U.; Kamp, T. van de; vogelgesang, M.; Asadchikov, V.; Baumbach, T.; Myagotin, A.; Tsapko, S.; Weber, M.
    2014. Deutsche Tagung für Forschung mit Synchrotronstrahlung, Neutronen und Ionenstrahlen an Großgeräten (SNI 2014), Bonn, 21.-23. September 2014
  33. When hardware and software work in concert
    Vogelgesang, M.; Kopmann, A.; Farago, T.; Santos Rolo, T. dos; Baumbach, T.
    2013. 14th International Conference on Accelerator and Large Experimental Physics Control Systems, San Francisco, Calif., October 6-11, 2013
  34. When hardware and software work in concert
    Vogelgesang, M.; Kopmann, A.; Farago, T.; Santos Rolo, T. dos; Baumbach, T.
    2013. 14th International Conference on Accelerator and Large Experimental Physics Control Systems, San Francisco, Calif., October 6-11, 2013 Proceedings Publ.Online Paper TUPPC044
  35. Experiment control for high-speed tomography
    Vogelgesang, M.; Farago, T.; Rolo, T.; Kopmann, A.; Mexner, W.; Baumbach, T.
    2013. 27th Tango Collaboration Meeting, Barcelona, E, May 21-24, 2013
  36. A GPU-based architecture for real-time data assessment at synchrotron experiments
    Chilingaryan, S.; Caselle, M.; Farago, T.; Kopmann, A.; Mirone, A.; Santos Rolo, T. dos; Stevanovic, U.; Vogelgesang, M.
    2013. 532nd Wilhelm und Else Heraeus-Seminar on Development of High-Resolution Pixel Detectors and their use in Science and Society, Bad Honnef, May 23-25, 2013
  37. Software and Services for Structured Data: Large scale data management LSDF
    Stotzka, R.; Tonne, D.; Jejkal, T.; Hartmann, V.; Pasic, H.; Schmidt, T.; Rindone, F.; Ochsenreither, S.; Weber, M.; Mexner, W.; Hagelstein, M.; Vagovic, P.; don Santos Rolo, T.; Farago, T.; Wezel, J. van; Hardt, M.; Garcia, A.; Kupsch, R.; Bourov, S.; Streit, A.
    2011. HDRI-Workshop, DESY Hamburg, 16.Mai 2011